example: If i'm orbiting Earth, on stage 1 I put escape and on stage 2 instead of giving me the planet for target it's giving me also a buntch of moon (phobos, oberon, titania......)
Any idea of what's gooing on
I get the same thing, and it's not what the OP was getting. What I see in 2006P1 is that all the small moons are not in orbit around their planet, but are a long way away from the solar system at a high speed. Phobos, Diemos, Oberon, Titania, and Triton are all affected. This is with a fresh install of Orbiter (actually, on a fresh install of Windows), with no addons. Note that this one (I'm not sure about the OP's problem) is an orbiter problem, not a transx problem.
It's a pain for me because I've wanted to try landing on Phobos and haven't been able to.
From looking around, it seems as if these small moons are a problem because they use analytic methods to calculate their position, which, possibly, over a long period of time, has caused them to undergo severe accuracy problems.
I haven't got the slightest idea as to how one would go about fixing this.