All crashes point to line 138 in SSU.Workbench.Model.Mission of Mission.cs. The error is System.IndexOutOfRangeException, 0x80131508.
It is almost certainly related to some vessel file which is probably empty, and when trying to read the mass and attachment count = kaput.
I disabled that code as it isn't used (see my big post above). Didn't compile it (didn't even open VS :lol but it should work now.