Thorsten
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If it's a trueman show, then that approach makes sense. If it's an attempt at socio-historical modeling, then you pretty much have to let the system interact with itself. If you start abstracting that, you're already limiting the result.
The whole idea of the experimental verification was to look for abstraction artifacts, so if it's not abstracted on some level, that's kind of pointless.
Now we're left to talk about what's the right abstraction level for a social simulation - which I don't know - but I dare say subatomic level is too deep.
Also, note that you're (simulated to be) smarter than the people talking about certainty of afterlife because of everyone being (again and again) in a simulation is much more likely than being in the real thing - obviously there's different kids of simulations possible...