This is a clever idea, although implies some sort of mechanical complication of the aeroshell design. I can suppose that, after seven and a half years of flight, problems in the hermetic closure of the "holes" during the aerocapture can emerge. The expected approach velocity to the Neptune atmosphere is nearly 31 km/sec, the heat environment very severe and even a small leak can be fatal. Obviously, if the holes are in the aft of the spacecraft, a less critical area, the problem is in part bypassed.
After some lecture of a long and exhaustive document about a similar design (the link is somewhere in this topic), i'm convinced myself that the problem of the RTG heating can be solved with an active cooling system with external radiators. I have the need to shift outside as many component as possible, to reduce the dimensions of the aeroshell and thus the overall weight of the spacecraft (the aeroshell is the heaviest component), so my idea could look like this:
At the front, the aeroshell, divided in heat shield (bottom), upper shield (up) and backshell. The spacecraft is enclosed in the aeroshell, that is about 2.2 meters long.
At rear, a hollow cylindrical cruise stage, with the radiators for the RTG cooling and all the equipments for the cruise (star trackers, sun sensors, low and medium gain antennas for the ordinary telemetry).
The cruise stage is detached minutes before the entry interface; after the aerocapture, the aeroshell opens and the probe is released, proceeding for the subsequent orbital maneuvres (perapsis raising, apoapsis adjustment).
---------- Post added 04-01-15 at 09:41 AM ---------- Previous post was 03-31-15 at 07:07 PM ----------
This is the full document:
http://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/20060012088.pdf
Look at the pag. 26 for the thermal problem.